##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index13_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20198926	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.00814716584436	33.0	31.0	34.0	30.0	34.0
2	32.156037949740494	33.0	31.0	34.0	30.0	34.0
3	32.22843452171665	34.0	31.0	34.0	30.0	34.0
4	35.71118979296226	37.0	35.0	37.0	33.0	37.0
5	35.69655698525753	37.0	35.0	37.0	33.0	37.0
6	35.66084543306906	37.0	35.0	37.0	33.0	37.0
7	35.67864291398463	37.0	35.0	37.0	33.0	37.0
8	35.65769145349609	37.0	35.0	37.0	33.0	37.0
9	37.316798576320345	39.0	37.0	39.0	34.0	39.0
10-14	37.517388696804964	39.2	37.2	39.4	33.8	39.4
15-19	38.462341166060014	40.0	38.0	41.0	33.6	41.0
20-24	38.24698500306402	40.0	38.0	41.0	33.2	41.0
25-29	37.923534657238704	40.0	37.6	41.0	32.8	41.0
30-34	37.68751275191562	39.8	37.0	41.0	32.4	41.0
35-39	37.722186843003435	40.0	37.0	41.0	32.2	41.0
40-44	37.361232116994735	39.4	36.4	41.0	31.0	41.0
45-49	36.86808608536909	39.0	35.2	40.6	30.4	41.0
50-54	36.49632698292969	38.8	35.0	40.0	30.0	41.0
55-59	36.16076724079291	38.0	34.8	40.0	29.8	41.0
60-64	35.32771649344129	36.8	34.0	39.8	28.4	41.0
65-69	34.390698208409695	35.4	33.4	39.0	27.6	40.8
70-74	33.404502665141706	35.0	32.6	37.4	26.0	39.8
75-79	32.37023994246031	35.0	31.8	36.2	25.0	38.8
80-84	31.268292838936087	34.2	31.0	35.0	22.4	36.8
85-89	29.99374785570283	34.0	30.2	35.0	11.6	36.0
90	28.869465584457313	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	219.0
11	2311.0
12	7150.0
13	14458.0
14	23278.0
15	31937.0
16	40075.0
17	47461.0
18	54669.0
19	62550.0
20	73801.0
21	85462.0
22	99497.0
23	116292.0
24	137878.0
25	164511.0
26	196795.0
27	237879.0
28	287629.0
29	349597.0
30	430378.0
31	533589.0
32	676533.0
33	880957.0
34	1206997.0
35	1752071.0
36	2688900.0
37	3809545.0
38	4097772.0
39	2052845.0
40	35889.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.32121004849466	12.141952497870431	9.97259458250404	50.56424287113087
2	22.232346094826593	19.02477743683088	35.53261907791828	23.21025739042425
3	25.942495639444324	21.219267727767406	22.466937880072113	30.371298752716154
4	27.950252660049358	27.936834715239662	18.896200928597068	25.216711696113915
5	29.334810280072375	30.15802663061181	21.114262300668656	19.392900788647157
6	24.12430411532395	32.915229446934724	21.498415846319492	21.46205059142183
7	21.321413337709362	18.732482549274167	37.45202616388267	22.494077949133796
8	21.444116507907992	22.004257156073574	29.043577817432098	27.508048518586335
9	21.676922255745676	20.881220779691485	31.32382412442931	26.118032840133527
10-14	24.569386788850224	26.22750692368905	24.61347786907248	24.589628418388255
15-19	24.961079721255388	25.075519441740767	25.05102394674521	24.91237689025864
20-24	24.720143187858355	25.332290155452526	25.392648530880646	24.554918125808474
25-29	24.584510227680475	25.380719862974377	25.321168905040846	24.7136010043043
30-34	24.624457263654268	25.3107918375844	25.270033388617957	24.79471751014337
35-39	24.59517397709878	25.469028562307706	25.23376150538914	24.702035955204373
40-44	24.576723488641477	25.298442950001004	25.403019797061745	24.72181376429577
45-49	24.515916640233613	25.35545899379087	25.319004250815524	24.809620115159994
50-54	24.529676484609425	25.458900087793157	25.346484728044693	24.664938699552724
55-59	24.563133810818908	25.38325518492452	25.290333404946697	24.763277599309873
60-64	24.4685078736789	25.41211876894309	25.401612166849198	24.717761190528815
65-69	24.493426093047855	25.52261159391735	25.388981861011157	24.59498045202364
70-74	24.534016310059158	25.47990337544972	25.272468127534403	24.71361218695672
75-79	24.548867659967915	25.41858067284457	25.35386056138235	24.67869110580516
80-84	24.470745130294734	25.546717386489732	25.367810510531903	24.614726972683634
85-89	24.587720771587477	25.53359295691182	25.255947389894217	24.622738881606487
90	24.323592394452202	25.628836914044662	25.455402049700965	24.59216864180217
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.88545291962554
2	45.44260348525084
3	56.313794392160474
4	53.16696435616327
5	48.72771106871953
6	45.58635470674578
7	43.81549128684316
8	48.952165026494335
9	47.7949550958792
10-14	49.159015207238475
15-19	49.87345661151403
20-24	49.27506131366683
25-29	49.29811123198478
30-34	49.419174773797636
35-39	49.297209932303154
40-44	49.298537252937244
45-49	49.32553675539361
50-54	49.194615184162146
55-59	49.326411410128784
60-64	49.186269064207714
65-69	49.08840654507149
70-74	49.247628497015874
75-79	49.227558765773075
80-84	49.085472102978365
85-89	49.21045965319396
90	48.91576103625438
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	5.0
2	7.0
3	7.0
4	6.0
5	9.0
6	12.5
7	21.5
8	32.5
9	60.5
10	85.0
11	102.5
12	152.5
13	234.0
14	371.0
15	612.5
16	1088.5
17	1906.5
18	3271.0
19	5792.5
20	7445.0
21	10078.5
22	16941.0
23	27409.0
24	41775.0
25	60765.5
26	85104.0
27	115022.0
28	147994.0
29	183272.5
30	202022.0
31	220008.5
32	258722.0
33	302271.0
34	349604.0
35	396234.0
36	443850.0
37	499620.0
38	549021.0
39	588516.0
40	608883.0
41	621795.5
42	649034.0
43	674834.0
44	690505.5
45	696323.5
46	696567.0
47	693404.5
48	692286.5
49	692132.5
50	691311.0
51	683920.0
52	677550.5
53	668119.0
54	660693.0
55	661265.5
56	651959.0
57	635962.5
58	615717.0
59	590920.0
60	577224.0
61	560641.5
62	528155.0
63	487496.0
64	437770.0
65	388483.5
66	339745.0
67	287959.5
68	238559.0
69	193096.0
70	169671.0
71	149345.5
72	112232.0
73	81603.0
74	55652.0
75	34675.5
76	20398.5
77	11120.5
78	5253.0
79	2246.0
80	1239.0
81	870.0
82	365.0
83	165.0
84	78.0
85	45.5
86	28.5
87	18.0
88	13.0
89	9.0
90	7.0
91	4.0
92	1.5
93	1.5
94	1.0
95	1.0
96	0.5
97	0.0
98	0.5
99	0.5
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0175058812532904
3	0.0380812326358342
4	0.0472549877156835
5	0.051636408787279084
6	0.005322065143463568
7	0.020119881621428783
8	0.01625829016849708
9	0.013782911032002394
10-14	0.019365386060625205
15-19	0.008628181518165867
20-24	0.004458652900654223
25-29	0.0021110033276026657
30-34	0.004481426388709974
35-39	0.0017228638790002992
40-44	9.465849817955667E-4
45-49	0.0036199944492098244
50-54	4.198243015494982E-4
55-59	0.0032051209059333154
60-64	9.792599863972966E-4
65-69	0.004337854398793282
70-74	0.004516081696620899
75-79	0.008930177772818218
80-84	0.006828085810106933
85-89	0.006816203990251759
90	0.0027971784242389916
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0198926E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.72539259372711
#Duplication Level	Relative count
1	100.0
2	30.26726795060094
3	15.788874868124367
4	9.669845472787076
5	6.667218303303614
6	4.757865993669969
7	3.7431993545851348
8	3.014004675120498
9	2.461678492377071
10++	30.493783744647402
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4257610	2.5859945	5.0055103	1
CCTGG	4242645	2.5690725	5.9936166	1
GAAGA	4222820	2.5169702	5.000101	2
CTTCT	4378315	2.5079103	5.3850465	1
AAGAA	4301360	2.5011284	5.0154743	2
CTGGA	4010020	2.405432	8.722506	1
TCCAG	3933230	2.3235056	5.584788	2
CTCCT	3963095	2.2985535	7.3905644	1
CTGGG	3663535	2.252642	8.298569	1
CAGGA	3696520	2.224138	5.5768557	1
CTTCA	3809595	2.1887987	5.715577	1
CCCAG	3607335	2.1577244	7.0402327	1
CTCCA	3704230	2.1549644	7.977386	1
CAGAA	3516080	2.063869	5.087844	1
CTCTG	3397685	2.0010383	6.150592	1
CTGGC	3120985	1.8898674	5.398448	1
TGGAA	3109355	1.8476673	5.283967	2
CTGAA	3109885	1.8198919	5.18691	1
CTCAG	2912180	1.7203333	6.0793915	1
CTGGT	2773570	1.658684	5.012319	1
CTTGG	2727890	1.6313659	5.3408146	1
>>END_MODULE
